Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLWRQTPDLEQLNASQKNSIGDLLGIRFEAFDDESLTASMPVDSRTHQPFGLLHGGASVVLAESLGSMASYLCVDTSQYYCVGLEVNANHLRGLRSGRVTAVARAIHLGRTTHVWDIRLSGDDGKPSCIARLTMAVVPLAGRAG
4QDB Chain:A ((2-140))
-SLWRQTPDLEQLNASQKNSIGDLLGIRFEAFDDESLTASMPVDSRTHAPFGLLHGGASVVLAESLGSMASYLCVDTSQYYCVGLEVNANHLRGLRSGRVTAVARAIHLGRTTHVWDIRLSGDDGKPSCIARLTMAVVPL-----
General information:
TITO was launched using:
RESULT:
Template:
4QDB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98013 for 1073 contacts (-91.3/contact) +
2D Compatibility (PS) -14816 + (NN) -6029 + (LL) 252
1D Compatibility (HY) -19200 + (ID) 6900
Total energy: -144706.0 ( -134.86 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_4QDB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QDB-query.scw
PDB file :
Tito_Scwrl_4QDB.pdb
: