Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTSQINRQYQLAQR-PSGLPGRDTFSFVET-------PLGEPAEGQILVKNEYLSLDPAMRGWM--NDARSYIPPVGIGEVMRALGVGKVLVSKHPGFQAGDYVNGALGVQDY-FIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNE-DLAAGLKRECPKGIDVFFDNVGGEILDTVLTRIAFKARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSREDIVEGLETFPETLLKLFSGENFGKLVLKV |
| 4NH4 Chain:A ((10-347)) | ----VNKQVLLKHFIPEGAPKETDMELVTTGTIRLRVPEGSNA---VLLKNLYLSCDPYMRMRMTKHEEASYVDDFVPGAPITGFGVGKVVDSSHPDFKTGDYVWGLIGWEEYSLITKPQGLFKIHHTEIPLSYYTGILGMVGLTAYVGFYDICSPKKGERVFVSAAAGAVGQIVGQFAKQFGCYVVGSAGSDEKVNLLKTKFGFDEAFNYKKEPDLTKALKRYFPEGIDIYFENVGGPMLEAVLHNMRIKGRIAACGMISQY-NLEKPEGVHNLFLIVGKRIRLEGFLVFDHYGSYPEFEEKVVQLIKEEKIKYLEDIVEGLENAPAALIGLFEGRNVGKQVVVV |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NH4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -181600 for 2797 contacts (-64.9/contact) +
2D Compatibility (PS) -35241 + (NN) -16645 + (LL) 324
1D Compatibility (HY) -33600 + (ID) 7300
Total energy: -274062.0 ( -97.98 by residue)
QMean score : 0.436
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