Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIACLDLEGVLVP-EIWIAFAEKTG---IDAL--KATTRDIPDYDVLMKQRLRILDEHGLKLGDIQEVIATLKPLEGAVEFVDWLRER-FQVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLYYRVIAAGDSYNDTTMLSEAHAGILFHAPENVIREFPQFPAVHTYEDLKREFLKASSRSLSL
4AP9 Chain:A ((10-180))
-KVAVIDIEGTLTDFEFWREMARITGKREIEELLEKGLSGEVEWLDSLLK-RVGLI--RGIDEGTFLRTREKVNVSPEARELVETLREKGFKVVLISGSFEEVLEPF-KELG-DEFMANRAIFEDG-KFQGIRLRFRD-KGEFLKRFRDGF--ILAMGDGYADAKMFERADMGI------AVGREIPGADLLVKDLKELVDFIKNLK-----
General information:
TITO was launched using:
RESULT:
Template:
4AP9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121133 for 1252 contacts (-96.8/contact) +
2D Compatibility (PS) -17328 + (NN) -7144 + (LL) 1580
1D Compatibility (HY) -12800 + (ID) 2700
Total energy: -159525.0 ( -127.42 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_4AP9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AP9-query.scw
PDB file :
Tito_Scwrl_4AP9.pdb
: