Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSVFDRDDIQFQVVVNHEEQYSIWPEYKEIPQGWRAAGKSGLKKDCLAYIEEVWTDMRPLSLRQHMDKAAG
2LPD Chain:A ((23-87))
-------DDELYFVVRNNEGQYSVWMDGRSLPAGWETVGEPATKQQCLQRIEQLWTDMVPASVREHLNQHSG
General information:
TITO was launched using:
RESULT:
Template:
2LPD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13529 for 344 contacts (-39.3/contact) +
2D Compatibility (PS) -6848 + (NN) -1761 + (LL) 580
1D Compatibility (HY) -4000 + (ID) 1400
Total energy: -26958.0 ( -78.37 by residue)
QMean score : 0.362
(partial model without unconserved sides chains):
PDB file :
Tito_2LPD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LPD-query.scw
PDB file :
Tito_Scwrl_2LPD.pdb
: