Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLKPQTLMVAIQCVAARTRELDAQLQNDDPQNAAELEQLLVGYDLAADDLKNAYEQALGQYSGLPPYDRLIEEPAS
3VPV Chain:A ((2-77))
-NLKPQTLMVAIQCVAARTRELDAQLQNDDPQNAAELEQLLVGYDLAADDLKNAYEQALGQYSGLPPYDRLIEEPAS
General information:
TITO was launched using:
RESULT:
Template:
3VPV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6518 for 386 contacts (16.9/contact) +
2D Compatibility (PS) -8341 + (NN) -9525 + (LL) 208
1D Compatibility (HY) 3600 + (ID) 750
Total energy: -8290.0 ( -21.48 by residue)
QMean score : 0.401
(partial model without unconserved sides chains):
PDB file :
Tito_3VPV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VPV-query.scw
PDB file :
Tito_Scwrl_3VPV.pdb
: