Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTFVVLEECIRCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVAAIRAEDEVPLGQRQFIALNGELAAHPNWTQITRKK-PAPDDHDAWFGLPGKLAELDRNGA
1FDB Chain:A ((1-106))
-AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEVPEDMQEFIQLNAELAEV--WPNITEKKDPLPDAED-WDGVKGKLQHLER---
General information:
TITO was launched using:
RESULT:
Template:
1FDB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81329 for 812 contacts (-100.2/contact) +
2D Compatibility (PS) -11451 + (NN) -10271 + (LL) 24
1D Compatibility (HY) -12800 + (ID) 3700
Total energy: -119527.0 ( -147.20 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_1FDB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FDB-query.scw
PDB file :
Tito_Scwrl_1FDB.pdb
: