Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTAQEFRAGQVANINGAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFADPLYVFMDSE-FNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDKVISVELPTTIVRQIAYTEPAVRGDTSGKVMKTARLNNGAELQVSAFCEIGDSIEIDTRTGEYKSRVKA
3A5Z Chain:B ((9-139))
---SNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGDNAKWLLDQAE--CIVTLWNGQPISVTPPNFVELEIV-----------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3A5Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70539 for 846 contacts (-83.4/contact) +
2D Compatibility (PS) -13601 + (NN) 4444 + (LL) 3540
1D Compatibility (HY) -5600 + (ID) 1900
Total energy: -83656.0 ( -98.88 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_3A5Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3A5Z-query.scw
PDB file :
Tito_Scwrl_3A5Z.pdb
: