Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRALLLSGCLALVLLTQQAAAQTLLVVGDSISAA-LGLDTSQGWVALLQKRLADEGYD-YRVVNASISGDTSAGGLARLPALLAEEKPALVVIELGGNDGL--RGMAPAQLQQNLASMAQKARAEGAKVLLLGIQLPP--NYGPR------YIEAFSRVYGAVAAQEKTALVPFF--LEGVGGVQGMMQADGIHPALAAQPRLLENVWPTLKPLL
1YZF Chain:A ((2-169))
---------------------RKIVLFGDSITAGYLDEAVSPVLVDLVKRDIAAMGLEEVAVINAGMPGDTTEDGLKRLNKEVLIEKPDEVVIFFGANDASLDRNITVATFRENLETMIHEIGSE--KVILI---TPPYADSGRRPERPQTRIKELVKVAQEVGAAHNLPVIDLYKAMTVYPGTDEFLQADGLH---------------------
General information:
TITO was launched using:
RESULT:
Template:
1YZF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66107 for 1165 contacts (-56.7/contact) +
2D Compatibility (PS) -17033 + (NN) -11175 + (LL) 4360
1D Compatibility (HY) -14000 + (ID) 2650
Total energy: -106605.0 ( -91.51 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_1YZF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YZF-query.scw
PDB file :
Tito_Scwrl_1YZF.pdb
: