Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNAKEILVHSLRLLENGDARGWCDLFHPEGVLEFPYAPPGWKTRFEGRETIWAHMRLFPEHLTVR-FTDVQFYETADPDLAIGEFHGDGVATVSGGKLAQDYISVLRTRDGQILLYRDFWNPLRHLEALGGVEAAAKIVQGA
1S5A Chain:A ((27-140))
-----------------DMKSWTELWDENAVFEFPYAPEGSPKRIEGKAAIYDYIKDYPKQIHLSSFTAPTVYRSADSNTVIAEFQCDGHVIETGLPYRQSYISVIETRDGRIVRYRDYWNPLVVKEAFGG-----------
General information:
TITO was launched using:
RESULT:
Template:
1S5A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37868 for 715 contacts (-53.0/contact) +
2D Compatibility (PS) -12081 + (NN) -6543 + (LL) 2788
1D Compatibility (HY) -8800 + (ID) 2400
Total energy: -64904.0 ( -90.77 by residue)
QMean score : 0.304
(partial model without unconserved sides chains):
PDB file :
Tito_1S5A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S5A-query.scw
PDB file :
Tito_Scwrl_1S5A.pdb
: