Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDRLQIEDLLLGDGKEVVKGALITTQYKGTLEDGTLFDSSYERGRPFQCVIGTGRVIKGWDQGLMGMKVGGKRRLFVPSHLAYGERQVGAHIKPHSNLLFEIELLEVLTRDD
3VAW Chain:A ((106-209))
----LKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV-----
General information:
TITO was launched using:
RESULT:
Template:
3VAW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56812 for 775 contacts (-73.3/contact) +
2D Compatibility (PS) -10540 + (NN) 3709 + (LL) 328
1D Compatibility (HY) -7600 + (ID) 2700
Total energy: -73615.0 ( -94.99 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_3VAW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VAW-query.scw
PDB file :
Tito_Scwrl_3VAW.pdb
: