Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALQRTLSIIKPDAVSKNVIGEILTRFEKAGLRVVAAKMVQLSEREAGGFYAEHKERPFFKDLVSFMTSGPVVVQVLEGEDAIAKNRELMGATDPKKADAGTIRADFAVSIDENAVHGSDSEASAAREIAYFFAATEVCERIR
3VGT Chain:A ((2-141))
-ATERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEHKERPFFGDLVGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAEAGTIRADYAQSIDANAVHGSDSPESAAREIAYFFEESEICSR--
General information:
TITO was launched using:
RESULT:
Template:
3VGT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51651 for 1087 contacts (-47.5/contact) +
2D Compatibility (PS) -14827 + (NN) -2943 + (LL) 512
1D Compatibility (HY) -14800 + (ID) 5500
Total energy: -89209.0 ( -82.07 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_3VGT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VGT-query.scw
PDB file :
Tito_Scwrl_3VGT.pdb
: