Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSELNLTTDEARVSYGIGRQLG----DQLRENPVPGMTLDA--VLAGLSDAFAGIDSRVSGEALSASFQVIRERMQAEAQAKAEAAAGE----GRAYLAENAKREGVTVLPSGLQFEVLSTGEGAKPSREDTVRTHYHGTLIDGTVFDSSYQRGQPAEFPVGGVIAGWVEALQLMNAGSKWRLHVPSELAYGGQAVGSIPPHSVLVFDVELLEIL
1Q6U Chain:A ((15-223))
----AFKNDDQKSAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFAD-KSKLSDQEIEQTLQAFEARVKSSAQAKMEKDAADNEAKGKEYREKFAKEKGVKTSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPGIPPNSTLVFDVELLDV-
General information:
TITO was launched using:
RESULT:
Template:
1Q6U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66423 for 1318 contacts (-50.4/contact) +
2D Compatibility (PS) -22144 + (NN) -11415 + (LL) 840
1D Compatibility (HY) -15600 + (ID) 4150
Total energy: -118892.0 ( -90.21 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_1Q6U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q6U-query.scw
PDB file :
Tito_Scwrl_1Q6U.pdb
: