Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFKPFVGVALAALFAVSAVAHAEDAGPVVIKFSHVVSDDTPKGKGALLFKKLAEERLPGKVKVEVYPNSTLFGDADEIEALRANKVQMLATSLSKFEPYTKQLQVFDLPFLFDDLEALKRFQKRDKSRELLRSM-AKHGIYGLAYWNNGMKQLSATRELHRPDDAKGLVFRIQPSSVLEAQFAML-GATAKQLSYAETLKAMQAGSVQGTENTWSNLAGQKIDSVQPYITETNHGALSYMLITSSAFWTGIPYQTRTELESIVDEVTLVVNKEAEALNQKEREHLLAAGKSRLVSLSAEEHEAWRNAMKPLWKNYEAQIGSDVLRAAQVVNRKR |
4MAG Chain:A ((28-293)) | -----------------------------------------------------EEMSQGEIKLALYPSAQLGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMFESDFGQGVRDEMLQKFNWRALDTWYNGTRETTSNRPLNSIEDFKGLKLRV-PNAKQNLNYAKLSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVIISESTWQKL---SDTDKDIIQKAVQKVGDAHTQTVKTQEAE-LVSFFKSEGINVTYPDLEPFREAMQPLYKEFDSNIGQPIV---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MAG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -62757 for 2052 contacts (-30.6/contact) +
2D Compatibility (PS) -28580 + (NN) -14850 + (LL) 5448
1D Compatibility (HY) -14800 + (ID) 3400
Total energy: -118939.0 ( -57.96 by residue)
QMean score : 0.462
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