Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFNTEVQPGICMEPDAITQEYVFNHTMLRVKDPKRSLDFYSRVLGMRLLRRLDFEEGRFSLYFLAMTRGEEVPDAVDERQRYTFGRQSVLELTHNWGSESDDSQ-YHNGNQDPRGFGHICFSVPDLVAACERFETLGVNFVKPLDRG-MKNVAFISDPDGYWVEIVQASLNGEMGRG
4OPN Chain:A ((20-175))
-----------CSDPDPSTKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEIL-----------
General information:
TITO was launched using:
RESULT:
Template:
4OPN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80775 for 1020 contacts (-79.2/contact) +
2D Compatibility (PS) -16751 + (NN) -9876 + (LL) 820
1D Compatibility (HY) -18000 + (ID) 4550
Total energy: -129132.0 ( -126.60 by residue)
QMean score : 0.435
(partial model without unconserved sides chains):
PDB file :
Tito_4OPN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OPN-query.scw
PDB file :
Tito_Scwrl_4OPN.pdb
: