Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIIPAIDLKDGACVRLRQGLMEDATVFSDDPVAMAAKWVDGGCRRLHLVDLNGAFEGKPVNGEVVTAIARRYPDLPIQIGGGIRSLETIEHYVRAGVSYVIIGTKAVKQPEFVGEACRAFPGKVIVGLDAKDGFVATDGWAEVSEVQVIDLARRFEADGVSAIVYTDISKDGMMQGCNVEATAALANATRIPVIASGGIHNLGDIQKLLDARTPGIIGAITGRAIYEGTLDVAEAQALCDNFKA
2X30 Chain:A ((6-235))
--LLPAVDVRDGQAVRLVHGESGTETSYGS-PLEAALAWQRSGAEWLHLVDLDAAF-GTGDNRALIAEVAQAM-DIKVELSGGIRDDDTLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGNGWTR-DGGDLYETLDRLNKEGCARYVVTDIA-------PNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEA---------
General information:
TITO was launched using:
RESULT:
Template:
2X30.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -191481 for 1877 contacts (-102.0/contact) +
2D Compatibility (PS) -24174 + (NN) -11369 + (LL) 1324
1D Compatibility (HY) -14800 + (ID) 3650
Total energy: -244150.0 ( -130.07 by residue)
QMean score : 0.620
(partial model without unconserved sides chains):
PDB file :
Tito_2X30.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2X30-query.scw
PDB file :
Tito_Scwrl_2X30.pdb
: