Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLQATCARIARRFVWRNRMPRRLFIGLFLLPLPLFAAPPKDELAYAVGARLGMRLQQEMPGLELSELLLGLRQAYRGEALEIPPERIEQLLLQHENATTETPRTTPAEARFLANEKARFGVRELTGGVLVSELRRGQGN---GIGAATQVHVRYRGLLADGQVFDQSE---SAEWFALDSVIEGWRTALRAMPVGARWRVVIPSAQAYGHEGAGDLIPPDAPLVFEIDLLGFR
1JVW Chain:A ((51-171))
--------------------------------------------------------------------------------------------------------------FMEQKAAQPDAVKLPSGLVFQRIARGSGKRAPAIDDKCEVH--YTGRLRDGTVFDSSRERGKPTTFRPNEVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIK
General information:
TITO was launched using:
RESULT:
Template:
1JVW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64081 for 847 contacts (-75.7/contact) +
2D Compatibility (PS) -12656 + (NN) -5365 + (LL) 9628
1D Compatibility (HY) -10000 + (ID) 2250
Total energy: -84724.0 ( -100.03 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_1JVW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JVW-query.scw
PDB file :
Tito_Scwrl_1JVW.pdb
: