Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRSFVLLAFTLSLLAGCSSGPRLNTDYTSANQDSRVQFIVLHYTSTDLPHSLGILTHGGVSAHYLIGDDEP-----ATVYRLVDENRRAWHAGVSEWQGRTWLNATSIGIEIVNQGYRDTPQGRVWYPFSEAQIQALIPLLKDIAKRHGITPDRIIGHSDIAPGRKVDPGPLFPWKRLADAGLVPWPKPGELARRLAELNGQLP-DVRWFQQQLARHGYLVPQTGELEKDTRDVIGAFQMKYRPARFDGEPDLETAALLLAVPTS
3D2Z Chain:A ((11-254))
-----------------KEGYQLDTRRQAQAAYPRIKVLVIHYTADDFDSSLATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASLLELLARYGYDV-KPDMTPREQRRVIMAFQMHFRPTLYNGEADAETQAIAEAL---
General information:
TITO was launched using:
RESULT:
Template:
3D2Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107776 for 1805 contacts (-59.7/contact) +
2D Compatibility (PS) -26288 + (NN) -18902 + (LL) 1556
1D Compatibility (HY) -16400 + (ID) 5200
Total energy: -173010.0 ( -95.85 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_3D2Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D2Z-query.scw
PDB file :
Tito_Scwrl_3D2Z.pdb
: