Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTALNVLIYPDDHLKVVCEPVTKVND-----AIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDVEGDKQ----NQFVLINPEILASEG------ETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQIAKS
3E3U Chain:A ((2-178))
-AVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHG------
General information:
TITO was launched using:
RESULT:
Template:
3E3U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88273 for 1261 contacts (-70.0/contact) +
2D Compatibility (PS) -17579 + (NN) -5659 + (LL) 776
1D Compatibility (HY) -8400 + (ID) 2600
Total energy: -121735.0 ( -96.54 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_3E3U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3E3U-query.scw
PDB file :
Tito_Scwrl_3E3U.pdb
: