Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MLEVNILDKKWYSIVED--PKGFTLNIINASLKELKIDQYKPN-----ISIALADDNLLHQLNLRFRQ----------------MNKPTNVLSFPC---------EQLSSECDLGDIAISIDTVRKE------SDEYHIPIPAHVAHMLVHGLLHLLGYDHQKKGEEVVMKNLEGKILASLGYNMCAI-------------
1V77 Chain:A ((7-208))
VKFIEMDIRDKEAYELAKEWFDEVVVSIKFNEEVDKEKLREARKEYGKVAILLSNPKPSLVRDTVQKFKSYLIYVESNDLRVIRYSIEKGVDAIISPWVNRKDPGIDHVLAKLMVKKNVALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRRFLTSSAQEKWDVRYPRDLI-SLGVVIGMEIPQAKASISMYPEIILK
General information:
TITO was launched using:
RESULT:
Template:
1V77.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65057 for 1031 contacts (-63.1/contact) +
2D Compatibility (PS) -15832 + (NN) -5257 + (LL) -172
1D Compatibility (HY) -4800 + (ID) 950
Total energy: -92068.0 ( -89.30 by residue)
QMean score : 0.265
(partial model without unconserved sides chains):
PDB file :
Tito_1V77.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V77-query.scw
PDB file :
Tito_Scwrl_1V77.pdb
: