Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQIEKLRGQGLDEFFQGILTLENLEECYAFFDDVCTVNEIQSMAQRFQVAKMLH--DGKTYNVIESETG-ASTATISRVKRSLHY---GNDMYDVVFSRMTKPE
1J1V Chain:A ((31-89))
------------------------------------------ARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLI---
General information:
TITO was launched using:
RESULT:
Template:
1J1V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7899 for 324 contacts (-24.4/contact) +
2D Compatibility (PS) -5591 + (NN) -1997 + (LL) 3428
1D Compatibility (HY) 800 + (ID) 350
Total energy: -11609.0 ( -35.83 by residue)
QMean score : 0.229
(partial model without unconserved sides chains):
PDB file :
Tito_1J1V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J1V-query.scw
PDB file :
Tito_Scwrl_1J1V.pdb
: