Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEMSFRWYGEDDPVTLENIGQIPTMKGIVTAIYDVPVGEVWSRERIQQLKEKVEAAGLKISVIESVPVHEDIKLGRPTRDLLIDNYIQTVKNLAAEGIDTICYNFMPVFDWTRTDLAYQYPDGSTALIFDETVSKKMDPVNGELSLPGWDASYSKEEMKAIMDAYAEIDEEKLWENLTYFIKRIIPEAEAVGVKMAIHPDDPPYSIFGLPRIITGLEAIERFVKLYDSKSNGITLCVGSYASDPQNDVLEISRRAFELDRVNFVHARNIKLGDGKS--------------FKESAHPSEYGSIDMYEVIKLCHEFGFEGAIRPDHGRMIWGETGRPGYGLYDRALGATYLSGLYEAVIKGSK |
3CNY Chain:A ((32-300)) | ----------NLQQLLSDIVVA-GFQGTEVGGFF-P--------GPEKLNYELKLRNLEIAGQWFSS-Y--I-I-RDGIEKASEAFEKHCQYLKAINAPVAVVSEQT-YTIQRSD----------T--------------------ANI-----F--------KDKPYFTDKEWDEVCKGLNHYGEIAAKYGLKVAYHHHMG--------TGIQTKEETDRLMANTDPKLVGLLYDTGHIAVSD-GDYMALLNAHID--RVVHVHFKDVRRSKEEECRAKGLTFQGSFLNGMFTVPG--DGDLDFKPVYDKLIANNYKGWIVVEAEQDPSK----AN-PLEMAQIAHRYIKQHLIEN----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3CNY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -130351 for 2092 contacts (-62.3/contact) +
2D Compatibility (PS) -27055 + (NN) -4259 + (LL) 5332
1D Compatibility (HY) -4400 + (ID) 2000
Total energy: -162733.0 ( -77.79 by residue)
QMean score : 0.423
|
|
|