Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------MNKSKKIENYQLLLLQAQALFSDETNALANLSNASAMLNAMLP----NSVFTGFYLFDGK---ELILGPFQGGVS--CVHITLGKGVCGESAQTAKTLIV-DDVTKHANYISCDSKAM---SEIVVPMF--KNGKLLGVLDLDSSL-VADYDEIDQEYLEKFVGILVEHTIWNLDMFGVEK
1F5M Chain:A ((4-179))
STGFHHADHVNYSSNLNKEEILEQLLLSYEGLSDGQVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPFQGK--VACQMIQFGKGVCGTAASTKETQIVP-DVNKYPGHIA-CDG--ETKSEIVVPIISN-DGKTLGVIDIDCL-DYEGFDHVDKEFLEKLAKLINKSCVF---------
General information:
TITO was launched using:
RESULT:
Template:
1F5M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91438 for 1132 contacts (-80.8/contact) +
2D Compatibility (PS) -16461 + (NN) -6624 + (LL) 1284
1D Compatibility (HY) -13200 + (ID) 3000
Total energy: -129439.0 ( -114.35 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_1F5M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F5M-query.scw
PDB file :
Tito_Scwrl_1F5M.pdb
: