Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------MISSNYSYPLDPSWNTEDITKVLRFLNQVEHAYENSVK-VDDLLDSYKEFKKVVKSKAQEKQIDREFQRTSGYSTYQAVKAAQQQAKGFISLGR----------------------------------- |
| 2GM3 Chain:A ((5-175)) | PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSN-TSDFKILLLHVQVSIYASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGTVSAFCVKHAECPVMTIKRNADETPSDPADD |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GM3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 28621 for 525 contacts (54.5/contact) +
2D Compatibility (PS) -9795 + (NN) -5205 + (LL) 156
1D Compatibility (HY) -800 + (ID) 400
Total energy: 12577.0 ( 23.96 by residue)
QMean score : 0.243
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