Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVLQDFDNLLKKYAQLIISKGLNVQKGHTLALTIDVEQVHLAR---LLTEAAYEKGASEVIVDYTDDFITRQRLLHASDEVLTNVPQYTVDKSLALLNKKASRLVVKSSNPNAFATVDPKRLSETTRATAIALEEQSRAIQANKVSWNVAAAAGREWAALVFPE-----LKTSDQQVDALWDTIFKLNRIYEDDPIAAWDAHEAKLLEKATRLNQEQFDALHYTAP--GTDLTLGMPKNHIWEAAGSLNAQGETFIANMPTEEIFSAPDYRRADGYVTSTKPLSYAGVIIENMTFTFKDGKIINVTAEKGQETVQRLIEENDGARSLGEVALVPHKTPISLSGLIFFNTLFDENASNHLAIGSAYAFNVEGGTEMTSQELDEAGLNRSSTHVDFMIGSEQM---DIDGIRA------DGTAVPIFRNGEWAI---- |
| 3PV2 Chain:A ((6-439)) | --MPSMAPVLKNIMPAIVNVAVQGYLPNRKFESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAKNLKSLVIGDSDKLEV---GDFVVAIGNPFGLSQSATFGIVSALK-------NFIQTDAAINPGNSGGALVNAKGELIGINTAILVGIGFAIPINMVKDVAQQ-IIKFGSIHRGLMGIFVQHLTPELAQAMGYPEDFQGALVSQVNPNS----PAELAGLKAGDIITQINDTKITQATQVKTTIS--------------------LLRVGSTVKIIVERDNKPLTLSAVVTD----IKSHEQKLQSNNPFLYGLALRAFEQESPPH-----GNVIGVQVVGASE--NSAGWRAGIRPG----DIIISANKKPVTDVKSLQTIAQEKKKELLVQVLRGPGSMYLLVI |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PV2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -35907 for 2797 contacts (-12.8/contact) +
2D Compatibility (PS) -37370 + (NN) 8103 + (LL) 4208
1D Compatibility (HY) -8800 + (ID) 2850
Total energy: -72616.0 ( -25.96 by residue)
QMean score : 0.140
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