Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQFLGEFLGTFILVLLGDGVVAGNVLSK---TK-----------EEGTGWTAIVFGWGIACTVAVYVSGLFSPAHLNPAVTLAMASIGAISWGQVIPFIIAQMLGAMVAATILWLHYYPHWKETKDSGLILASFSTGPAIR-HTPSNLLGEIIGTAILVITIMAIGPSKV-AAGLGPIIVGIVIFAVGFSLGPTTGYAINPARDLGPRLMHAILPIENKGDSDWSYAWIPVVGPIIGGVLGAILYNIALTLI
2F2B Chain:A ((5-245))
TKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATV------GGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKGFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFA-G---TDLWNYYSIYVIGPIVGAVLAALTYQYLTS--
General information:
TITO was launched using:
RESULT:
Template:
2F2B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -180501 for 2061 contacts (-87.6/contact) +
2D Compatibility (PS) -22527 + (NN) -1019 + (LL) 564
1D Compatibility (HY) -19600 + (ID) 3800
Total energy: -226883.0 ( -110.08 by residue)
QMean score : 0.320
(partial model without unconserved sides chains):
PDB file :
Tito_2F2B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F2B-query.scw
PDB file :
Tito_Scwrl_2F2B.pdb
: