Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKKRYSKNSHNLITLLGIVVLASLISDFWSEVIATLLIIGGGYCAYYVYDKKRLKRFTSNQRIEALKSDIKETDQDIRHLEILKKDNRSKEYIKLAHQILPQLDLIRNEANQLQKAIEPNIYKRITKKANTFSNEINEQLIKLHASPE--LEPISDQEDEMIRIAPELKPFYHNIQDDHFAILKKIEEADNKAELAAIHQANMKRFTDVLAGYIRIKQSPKNFNNAKERLEQALQAIKKFNLDLDETLRQLNESDMKDFDVSLRMMQDERNSK
2KVP Chain:A ((1809-1973))
----------------------------------------------------------------------------------------GIDPFTNEAASAAGVVGGMVDSITQAINQLDEGPMGDPEGSFVDYQTTMVRTAKAIAVTVQEMVTKSNTSPEELGPLANQLTSDYGRLASQAKPAAVAAENEEIGAHIKHRVQELGHGCSALVTKAGALQCSPSD-VYTKKELIECARRVSEKVSHVLAALQAGNR--------------------
General information:
TITO was launched using:
RESULT:
Template:
2KVP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31029 for 1300 contacts (-23.9/contact) +
2D Compatibility (PS) -17676 + (NN) -9935 + (LL) 8428
1D Compatibility (HY) 800 + (ID) 750
Total energy: -50162.0 ( -38.59 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_2KVP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KVP-query.scw
PDB file :
Tito_Scwrl_2KVP.pdb
: