Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLVGKEIIEFSAQAYHDGKFITVTNEDVKGKWAVFCFYPADFSFVCPTELGDLQEQYETLKSLDVEVYSVSTDTHFVHKAWHDDSDVVGTITYPMIGDPSHLISQGFDVLGQD-GLAQRGTFIIDPDGVIQMMEINADGIGRDASTLIDKVRAAQYIRQHPGEVCPAKWKEGAETLTPSLDLVGKI
4MAB Chain:D ((1-186))
-SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGE---AKWKEGEATLAPSLDLVGKI
General information:
TITO was launched using:
RESULT:
Template:
4MAB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96283 for 1343 contacts (-71.7/contact) +
2D Compatibility (PS) -19784 + (NN) -9266 + (LL) 316
1D Compatibility (HY) -20000 + (ID) 5450
Total energy: -150467.0 ( -112.04 by residue)
QMean score : 0.569
(partial model without unconserved sides chains):
PDB file :
Tito_4MAB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MAB-query.scw
PDB file :
Tito_Scwrl_4MAB.pdb
: