Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MIKILAACGAGVNSSHQIKDAIETQLGDRGYNVHCDAVMVKDITEEMVNKYDIFTPIAKTDLGFNVPIPVVEAGPILYRIPVMSEPVFTALEQVIKEHNLS
1VKR Chain:A ((375-471))
SHVRKIIVACDAGMGSSAMGAGVLRKKIQDAGLS---QISVTNSAINNLPPDVDLVITHRDLTERAMRQVP---QAQHISLTNFLDSGLYTSLTERLVAAQRH
General information:
TITO was launched using:
RESULT:
Template:
1VKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44724 for 691 contacts (-64.7/contact) +
2D Compatibility (PS) -10050 + (NN) -1512 + (LL) 780
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -58606.0 ( -84.81 by residue)
QMean score : 0.360
(partial model without unconserved sides chains):
PDB file :
Tito_1VKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VKR-query.scw
PDB file :
Tito_Scwrl_1VKR.pdb
: