Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------------------MAKCLTLNTHSWMEVNAL---KKLFDLAEHIFREKYDIICLQEVNQSISSPLAKSSPNYHPIEGTPALHQDNFALQLVHYLNLQGLHYHWTWAYNHIGYSKYHEGVAILSLKPLKPEDILVSAVDDETDYHTRRALVAETTLNDKVVTVVSLHLSWFEKGFAEEWKRLETTLLEVET------PLLLMGDFNNPTGNQGYELVLNSPLAL--KDSHQIANHVFGDHTIMAD---IDGWEGNK---------KALKVDHIFTSEDLSISSSQVVFEGGEAPVV-------------SDHYGLEITMDF--- |
| 3NGQ Chain:A ((12-384)) | LPPRPWITLKERDLPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFK-TEKFTLVQKHTVEFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKSIPLVLCADLNSLPDSGVVEYLSNGGVADNHKDFKECLMNFSCEGRITHGFQLKSAYENNLMPYTNYTFDFKGVIDYIFYSKT-HMNVEGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQLELHPP |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NGQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -78970 for 2066 contacts (-38.2/contact) +
2D Compatibility (PS) -28878 + (NN) -7381 + (LL) 332
1D Compatibility (HY) -10400 + (ID) 2400
Total energy: -127697.0 ( -61.81 by residue)
QMean score : 0.223
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