Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPVNVISVAVVASDPLTRDGALARLSSHRELDVRAWQ-----A-GCETSVLLVLATTITAP-LLCQIEDVQKDGPSHAPKLVVVADEFSAEQVFRMIKLGLTGLLYRSQSTFDCIVETIRLSAEGRLRLPERVQRYLVGRIKSTPTAEPDTPCAAALAEREVAVLRLLADGLSTHQVAVQLNYCERTIKNIVHDIVTRLKLRNRTHAVAHALRAGLI
4YN8 Chain:A ((4-203))
----GSIRVMLIDDHPVVRAGLRSILDSFDDITVVAEASDGSNINTKGIDVVVTDIQ-MPGTDGITLTRALANA---GGPPVLILTTYDTEADILAAVEAGAMGYLLK-DAPESALHDAVVATFEGRRTLAPEVA--NAL-------MQRVSKPRQALSAREIEILQNLEQGLSNRQLAAKLFISEATVKTHLVHIYSKLGVDNRTAAITAARQQRLI
General information:
TITO was launched using:
RESULT:
Template:
4YN8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157521 for 1436 contacts (-109.7/contact) +
2D Compatibility (PS) -20788 + (NN) -7671 + (LL) 584
1D Compatibility (HY) -8000 + (ID) 2150
Total energy: -195546.0 ( -136.17 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_4YN8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YN8-query.scw
PDB file :
Tito_Scwrl_4YN8.pdb
: