Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSPYILVLYYSRHGATAEMARQIARGVEQ-GGFEARVRTVPAVSTECEAVAPDI------PAEGALYATLEDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGIPYSEPALLETRG--GGTPYGASHFAGADGKRSLDEHELTLCRALGKRLAETAGKLGS
2R96 Chain:C ((4-196))
-----VLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVP------ETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
General information:
TITO was launched using:
RESULT:
Template:
2R96.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81840 for 1591 contacts (-51.4/contact) +
2D Compatibility (PS) -19930 + (NN) -8909 + (LL) 800
1D Compatibility (HY) -12400 + (ID) 4000
Total energy: -126279.0 ( -79.37 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_2R96.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2R96-query.scw
PDB file :
Tito_Scwrl_2R96.pdb
: