Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIISVEGDLVVIRSESTFKNTEISFKLGVEFDEITPDDRKVKSIITLDGGVLVHVQKWDGKSTTIKKRRDGDKLVVECVMKGVTSTRVYERA
1FDQ Chain:A ((1-131))
-VEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTFGDVVAVRHYEKA
General information:
TITO was launched using:
RESULT:
Template:
1FDQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46182 for 913 contacts (-50.6/contact) +
2D Compatibility (PS) -14935 + (NN) -5663 + (LL) 208
1D Compatibility (HY) -12800 + (ID) 3750
Total energy: -83122.0 ( -91.04 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_1FDQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FDQ-query.scw
PDB file :
Tito_Scwrl_1FDQ.pdb
: