Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLVLAVLLTVGAAQEGISSRALWQFRSMIKCAIPGSHPLMDFNNYGCYCGLGGSGTPVDELDRCCETHDNCYRDAKNLDSCKFLVDNPYTESYSYSCSNTEITCNSKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYC
5P2P Chain:B ((1-119))
----------------------ALFQFRSMIKCAIPGSHPLMDFNNYGCYCGWGGSGTPVDELDRCCETHDNCYRDAKNLSGCY-----PYTESYSYSCSNTEITCNSKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYC
General information:
TITO was launched using:
RESULT:
Template:
5P2P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71783 for 864 contacts (-83.1/contact) +
2D Compatibility (PS) -12625 + (NN) -5982 + (LL) 2640
1D Compatibility (HY) -16400 + (ID) 5700
Total energy: -109850.0 ( -127.14 by residue)
QMean score : 0.385
(partial model without unconserved sides chains):
PDB file :
Tito_5P2P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5P2P-query.scw
PDB file :
Tito_Scwrl_5P2P.pdb
: