Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLLLAALLTAGVTAHSISTRAVWQFRNMIKCTIPGSDPLREYNNYGCYCGLGGSGTPVDDLDRCCQTHDHCYNQAKKLESCKFLIDNPYTNTYSYKCSGNVITCSDKNNDCESFICNCDRQAAICFSKVPYNKEYKDLDTKKHC
1FDK Chain:A ((1-121))
----------------------ALWQFNGMIKCKIPSSEPLLDFNNYGCYCGLGGSGTPVDDLDRCCQTHDNCYKQAKKLDSCKVLVDNPYTNNYSYSCSNNEITCSSENNACEAFICNCDRNAAICFSKVPYNKEHKNLDKK---
General information:
TITO was launched using:
RESULT:
Template:
1FDK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58896 for 902 contacts (-65.3/contact) +
2D Compatibility (PS) -12674 + (NN) -5663 + (LL) 2536
1D Compatibility (HY) -16000 + (ID) 4750
Total energy: -95447.0 ( -105.82 by residue)
QMean score : 0.432
(partial model without unconserved sides chains):
PDB file :
Tito_1FDK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FDK-query.scw
PDB file :
Tito_Scwrl_1FDK.pdb
: