Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLLLLAASIMAFGSIQVQGNIAQFGEMIRLKTGKRAELSYAFYGCHCGLGGKGSPKDATDRCCVTHDCCYKSLEKSGCGTKLLKYKYSHQGGQITCSANQNSCQKRLCQCDKAAAECFARNKKTYSLKYQFYPNMFCKGKKPKC
1GMZ Chain:A ((1-122))
---------------------DLWQFGKMILKETGKLPFPYYVTYGCYCGVGGRGGPKDATDRCCFVHDCCYGKL--TSCKPKTDRYSYSRKDGTIVCG-E-DPCRKEICECDKAAAVCFRENLDTYNKKYMSYLKSLCKK--DDC
General information:
TITO was launched using:
RESULT:
Template:
1GMZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39459 for 870 contacts (-45.4/contact) +
2D Compatibility (PS) -13065 + (NN) -8034 + (LL) 2940
1D Compatibility (HY) -10000 + (ID) 3000
Total energy: -70618.0 ( -81.17 by residue)
QMean score : 0.333
(partial model without unconserved sides chains):
PDB file :
Tito_1GMZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GMZ-query.scw
PDB file :
Tito_Scwrl_1GMZ.pdb
: