Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGPLPVCLPIMLLLLLPSLLLLLLLPGPGSGEASRILRVHRRGILELAGTVGCVGPRTPI-AYMKYGCFCGLGGHGQPRDAIDWCCHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLCGPAENKCQELLCKCDQEIANCLAQT--EYNLKYLFYPQFLCEPDSPKCD
1JLT Chain:B ((1-122))
------------------------------------------NLFQFAKMINGKLGAFSVWNYISYGCYCGWGGQGTPKDATDRCCFVHDCCYGRV--RGCNPKLAIYSYSFKKGNIVCG-KNNGCLRDICECDRVAANCFHQNKNTYNKNYKFLSSSRCRQTSEQC-
General information:
TITO was launched using:
RESULT:
Template:
1JLT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63343 for 875 contacts (-72.4/contact) +
2D Compatibility (PS) -12536 + (NN) -8314 + (LL) 2976
1D Compatibility (HY) -10000 + (ID) 2300
Total energy: -93517.0 ( -106.88 by residue)
QMean score : 0.235
(partial model without unconserved sides chains):
PDB file :
Tito_1JLT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JLT-query.scw
PDB file :
Tito_Scwrl_1JLT.pdb
: