Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLKKISKEEKTPGCVKIKKCIIM
3GFT Chain:C ((19-185))
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPT--DSYRKQVVIDGETCLLDILDTAG----SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK----------------------
General information:
TITO was launched using:
RESULT:
Template:
3GFT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102821 for 1317 contacts (-78.1/contact) +
2D Compatibility (PS) -18125 + (NN) -7521 + (LL) 2600
1D Compatibility (HY) -22000 + (ID) 7800
Total energy: -155667.0 ( -118.20 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_3GFT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GFT-query.scw
PDB file :
Tito_Scwrl_3GFT.pdb
: