Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRALLLSTLVAGALSCGLPANLPQLPRVVGGEDARPNSWPWQVSLQYDS-SGQWRHTCGGTLVDQSWVLTAAHCISS---SRTYRVVLGRHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASP----VSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNG-ASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAGG-DGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVIANN
3MHW Chain:U ((1-247))
----------------------------IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSAD-LAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCS-LQGRMTLTGIVSWGR--GCALKDKPGVYTRVSHFLPWIRSHTKE-
General information:
TITO was launched using:
RESULT:
Template:
3MHW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168276 for 2043 contacts (-82.4/contact) +
2D Compatibility (PS) -26197 + (NN) -18011 + (LL) 2132
1D Compatibility (HY) -16800 + (ID) 4150
Total energy: -231302.0 ( -113.22 by residue)
QMean score : 0.677
(partial model without unconserved sides chains):
PDB file :
Tito_3MHW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MHW-query.scw
PDB file :
Tito_Scwrl_3MHW.pdb
: