Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPIPNNPGAGENAFDPVFVNDDDGYDLDSFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVYNNE-------EFHILCLLKGSRGFFTALLKHLSRIHNYSAVETSKPLFGEHYVRVKSYCNDQSTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLFIKRTPLWNGFKADFVGFSIPDHFVVGYSLDYNEIFRDLDHCCLVNDEGKKKYKATSL
1TC1 Chain:A ((4-187))
-----------------------------------YE-FAEKILFTEEEIRTRIKEVAKRIADDYKGKGLRPYVNPLVLISVLKGSFMFTADLCRALCDF--------NV-PVRMEFICVSSY--------VRMLLDTRHSIEGHHVLIVEDIVDTALTLNYLYHMYFTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNAFVIGYGLDYDDTYRELRDIVVLRPE----------
General information:
TITO was launched using:
RESULT:
Template:
1TC1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -190815 for 1322 contacts (-144.3/contact) +
2D Compatibility (PS) -17662 + (NN) -1860 + (LL) 1320
1D Compatibility (HY) -16800 + (ID) 2550
Total energy: -228367.0 ( -172.74 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_1TC1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TC1-query.scw
PDB file :
Tito_Scwrl_1TC1.pdb
: