Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRDL
1CD2 Chain:A ((1-206))
MNQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRDL
General information:
TITO was launched using:
RESULT:
Template:
1CD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151968 for 1556 contacts (-97.7/contact) +
2D Compatibility (PS) -22298 + (NN) -8948 + (LL) 0
1D Compatibility (HY) -31200 + (ID) 10300
Total energy: -224714.0 ( -144.42 by residue)
QMean score : 0.803
(partial model without unconserved sides chains):
PDB file :
Tito_1CD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CD2-query.scw
PDB file :
Tito_Scwrl_1CD2.pdb
: