Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKEWGYADHNGPDHWHELFPNAKGENQSPIELNTKEISHDPSLKPWTASYDPGSAKTILNNGKTCRVVFDDTYDRSMLRGGPLAAPYRLRQFHLHWGSSDDHGSEHSVDGVKYAAELHLVHWNS-KYNSYATALKHADGIAVVGVFLKIGREKGEFQLLLDALDKIKTKGKEAPFNNFNPSCLFPACRDYWTYHGSFTTPPCEECIVWLLLKEPITVSSDQIAKLRTLYSSAENEPPVPLVRNWRPPQPIKGRIVKASFK
1KEQ Chain:A ((4-240))
------------------------GTRQSPINIQWKDSVYDPQLAPLRVSYDAASCRYLWNTGYAFQVEFDDSCEDSGISGGPLGNHYRLKQFHFHWGATDEWGSEHAVDGHTYPAELHLVHWNSTKYENCKKASVGENGLAVIGVFLKLGAHHQALQKLVDVLPEVRHKDTQVAMGPFDPSCLMPACRDYWTYPGSLTTPPLAESVTWIVQKTPVEVSPSQLSMFRTLLFSGRGEEEDVMVNNYRPLQPLRDRKLRSSFR
General information:
TITO was launched using:
RESULT:
Template:
1KEQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104076 for 1965 contacts (-53.0/contact) +
2D Compatibility (PS) -26020 + (NN) -20523 + (LL) 884
1D Compatibility (HY) -21600 + (ID) 5550
Total energy: -176885.0 ( -90.02 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_1KEQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KEQ-query.scw
PDB file :
Tito_Scwrl_1KEQ.pdb
: