Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAILNILEFPDPRLRTIAKPVEVVDD-----AVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKS----EPRVFINPEFEPLTE------DMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA
3E3U Chain:A ((2-178))
-AVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINPVLET-SEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHG----
General information:
TITO was launched using:
RESULT:
Template:
3E3U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60204 for 1258 contacts (-47.9/contact) +
2D Compatibility (PS) -17189 + (NN) -2461 + (LL) 868
1D Compatibility (HY) -10400 + (ID) 3100
Total energy: -92486.0 ( -73.52 by residue)
QMean score : 0.689
(partial model without unconserved sides chains):
PDB file :
Tito_3E3U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3E3U-query.scw
PDB file :
Tito_Scwrl_3E3U.pdb
: