Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKNHPLQPHTDAVEV
1N5N Chain:A ((13-163))
-MAILNILEFPDPRLRTIAKPVE-VVDDAVRQLIDDMFETMYE------------APGIGLAATQVNVHKRIVVMDLSEDK-S--EPRVFINPEFEPLTEEMD--QYQEGCLSVP-GFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTL------------
General information:
TITO was launched using:
RESULT:
Template:
1N5N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57133 for 1182 contacts (-48.3/contact) +
2D Compatibility (PS) -16218 + (NN) -4410 + (LL) 2128
1D Compatibility (HY) -11600 + (ID) 2300
Total energy: -89533.0 ( -75.75 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_1N5N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N5N-query.scw
PDB file :
Tito_Scwrl_1N5N.pdb
: