Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPSKKP--MFTLEERVALAQQATAHLGNVEVVGFSDLMANFARNQHATVLIRGLRAVADFEYEMQLAHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQGDVTHFLPENVHQALMAKLA
1OD6 Chain:A ((2-159))
---HVVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLEN-----QYLFSAEERLAIIREATAHLANVEAATFSGLLVDFVRRVGAQAIVKGLRAVSDYEYELQMAHLNRQLYPGLETLFILAATRYSFVSSTMVKEIARYGGDVSKLVPPATLRALKAKLG
General information:
TITO was launched using:
RESULT:
Template:
1OD6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123424 for 1186 contacts (-104.1/contact) +
2D Compatibility (PS) -16512 + (NN) -9140 + (LL) 212
1D Compatibility (HY) -16800 + (ID) 3600
Total energy: -169264.0 ( -142.72 by residue)
QMean score : 0.723
(partial model without unconserved sides chains):
PDB file :
Tito_1OD6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OD6-query.scw
PDB file :
Tito_Scwrl_1OD6.pdb
: