Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATPPKRFCPSPSTSSEGTRIKKISIEGNIAAGKSTFVNILKQASEDWEVVPEPVARWCNVQSTQEEFEELTTSQKSGGNVLQMMYEKPERWSFTFQSYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESDCMNETEWTIYQDWHDWMNSQFGQSLELDGIIYLRATPEKCLNRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTSFDYLQEVPVLTLDVNEDFKDKHESLVEKVKEFLSTL
4JLN Chain:B ((38-280))
-----------------GTRIKKISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSN---------ELTMEQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
General information:
TITO was launched using:
RESULT:
Template:
4JLN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103921 for 1813 contacts (-57.3/contact) +
2D Compatibility (PS) -24442 + (NN) -5250 + (LL) 1140
1D Compatibility (HY) -32800 + (ID) 10950
Total energy: -176223.0 ( -97.20 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_4JLN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JLN-query.scw
PDB file :
Tito_Scwrl_4JLN.pdb
: