Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAAGRLFLSRLRAPFSSMAKSPLEGVSSSRGLHAGRGPRRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGTQKACTAQSLGNLLDMMYREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREVNTFVKNL |
2VP4 Chain:A ((19-209)) | ------------------------------------QPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNV------------NGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTN-------KKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESIHV--QADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQR------RPQSCKVLVLDADL----------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VP4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -90898 for 1486 contacts (-61.2/contact) +
2D Compatibility (PS) -20232 + (NN) -6725 + (LL) 6696
1D Compatibility (HY) -15600 + (ID) 3650
Total energy: -130409.0 ( -87.76 by residue)
QMean score : 0.302
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