Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSVSTASTEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKELY--PGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIP-RKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQEDFEKILTAQGGMGDNSKEQLLEIVHDLENLSLDQSEHESADKKDKKLQRLNGHDSDEDGASNSSSSQKAAKE |
1YC5 Chain:A ((2-245)) | ----------KMKEFLDLLNE--SRLTVTLTGAGISTPSGIPDF-------------------QNVFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDVP---LCDDCNSLIRPNIVFFGENLPQDALREAIGL-------------SSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPF----DDIATLKYNMDVVEFARRVMEEGGI-------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YC5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -145319 for 1939 contacts (-74.9/contact) +
2D Compatibility (PS) -24708 + (NN) -7498 + (LL) 6164
1D Compatibility (HY) -18000 + (ID) 4200
Total energy: -193561.0 ( -99.83 by residue)
QMean score : 0.304
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