Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | M--LQNQDTMEILSNSTSKFPTFLLTGIPGLESAHVWISI--PFCCFYAIALSGNSVILFVIITQQSLHEPMYYFLFRLSATDLGLTVSSLSTTLGILWFEAREISLYSCIVQMFFLHGFTFMESGVLVATAFDRYVAICDPLRYTTILTNSRIIQMGLLMITRAIVLILPLLLLLKPLYFCRMNALSHSYCYHPDVIQLAC------SDIRANSICGLIDLILTT-GIDTPCIVLSYILIIHSVLRIA--------SPEEWHKVFSTCVSHVGAVAFFYIHMLSLSLVYRYGRSAP-RVVHSVMANVYLLLPPVLNPIIDSVKTKQIRKAMLSLLLTK------------------------ |
1U19 Chain:A ((4-349)) | MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLV------GWSR---------YIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1U19.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -263365 for 2438 contacts (-108.0/contact) +
2D Compatibility (PS) -29979 + (NN) 4934 + (LL) 1212
1D Compatibility (HY) 0 + (ID) 800
Total energy: -287998.0 ( -118.13 by residue)
QMean score : 0.226
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