Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDMADEPLNGSHTWLSIPFDLNGSVVSTNTSNQTEPYYDLTSNAVLTFIYFVVCIIGLCGNTLVIYVILRYAKMKTITNIYILNLAIADELF-MLGLPFLAMQVALVHWPFGKAICRVVMTVDGINQFTSIFCLTVMSIDRYLAVVHPIKSAKWRRPRTAKMITMAVWGVSLLV-ILPIMIYAGLRSNQWGRSSCTINWPGESG-AWYTGFIIYTFILGFLVPLTIICLCYLFIIIKVKSSGIRVGSSKRKKS------EKKVTRMVSIVVAVFIFCWLPFYIFNVSSVSMAISPTPALKGMFDFVVVLTYANSCANPILYAFLSDNFKKSFQNVLCLVKVSGTDDGERSDSKQDKSRLNETTETQRTLLNGDLQTSI |
4AMI Chain:B ((11-299)) | ------------------------------------------EAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMH-WWRDEDPQALKCYQD-PGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRK--------SRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNW---LGYANSAMNPIIYC-RSPDFRKAFKRLL------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4AMI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -221303 for 1996 contacts (-110.9/contact) +
2D Compatibility (PS) -26892 + (NN) 1082 + (LL) 4468
1D Compatibility (HY) -26400 + (ID) 4450
Total energy: -273495.0 ( -137.02 by residue)
QMean score : 0.260
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