Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRHSKRTHCPDWDSRESWGHESYRGSHKRKRRSHSSTQENRHCKPHHQFKESDCHYLEARSLNERDYRDRRYVDEYRNDYCEGYVPRHYHRDIESGYRIHCSKSSVRSRRSSPKRKRNRHCSSHQSRSKSHRRKRSRSIEDDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHGMDGMHVAVKIVKNVGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELLGLSTYDFIKENS-FLPFQIDHIRQMAYQICQSINFLHHNKLTHTDLKPENILFVKSDYVVKYNSKMKRDERTLKNTDIKVVDFGSATY-DDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFQTHDSKEHLAMMERILGPIPQHMIQKTRKR-KYFHHNQLD-----WDEHSSAGR-YVRRRCKPLK----EFMLCHD--E----EHEKLFDLVRRMLEYDPTQRITLDEALQHPFFDLLKKK |
| 4IIR Chain:A ((13-350)) | -------------------------------------------------------------------------------------------------------------------------------------------WTDAEGYYRVNIGEVLDKRYNVYGYTGQG--SNVVRARDNARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNES------------------KTILKLCDFGSASHVADNDITPYLVSRFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTGKILFPGKTNNHMLKLAMDLKGKMPNKMIRKGVFKDQHFDQ-NLNFMYIE------REKVTVMSTINPTKDLLADLI----LPEDQRKKVHQLKDLLDQILMLDPAKRISINQALQHAFIQE---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4IIR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195709 for 2426 contacts (-80.7/contact) +
2D Compatibility (PS) -33102 + (NN) -11964 + (LL) 8392
1D Compatibility (HY) -26800 + (ID) 4900
Total energy: -264083.0 ( -108.86 by residue)
QMean score : 0.479
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